Guantanamo Bay, Cuba (CNN) -- Silence and the odd outburst from accused 9/11 mastermind Khalid Sheikh Mohammed and four others turned an arraignment that could have lasted minutes into a 13-hour court session at Guantanamo Bay on Saturday.
It was the first appearance in a military courtroom for Mohammed and four others since they were charged last month for their alleged role in the planning and execution of the September 11, 2001, terror attacks that killed nearly 3,000 people.
The hearing, which wrapped just before 10:30 p.m., offered a rare glimpse of the five men who have not been seen publicly since 2008 when they were first charged by a military tribunal.
Mohammed and the others -- Walid Muhammad Salih, Mubarak bin 'Attash, Ramzi Binalshibh, Ali Abdul Aziz Ali, and Mustafa Ahmed Adam al Hawsawi -- appeared to work together to defy the judge's instruction, refusing to speak or cooperate with courtroom protocol.
The silence from the defendants -- some ignored the judge and others appeared to be reading -- slowed the proceedings to a crawl.
Bin 'Attash was wheeled into the courtroom in a restraining chair. It was unclear why he was the only defendant brought into court in that manner, though he was allowed out of restraints after he promised not to disrupt court proceedings.
Toward the end of the day, he took off his shirt while his attorney was describing injuries she alleged he sustained while in custody.
The judge told bin 'Attash, "No!" and warned that he would be removed from the courtroom if he did not follow directions.
At one point, bin 'Attash made a paper airplane and placed it on top of a microphone. It was removed after a translator complained about the sound the paper made against the microphone.
The judge, Col. James Pohl, needed the five to vocally confirm their desire to be represented by the attorneys who accompanied them to court. Because the defendants refused to cooperate, Pohl ruled the men would continue to be represented by their current military and civilian attorneys.
All five men are charged with terrorism, hijacking aircraft, conspiracy, murder in violation of the law of war, attacking civilians, attacking civilian objects, intentionally causing serious bodily injury and destruction of property in violation of the law of war.
If convicted, they face the death penalty.
There were so many allegations behind the charges, it took more than two hours for officers of the court just to read into the record the details of the 9/11 hijackings.
Earlier, the refusal of the defendants to speak caused an issue with the court translations.
Mohammed's lawyer said that his client "will decline to communicate with the court."
Because the men wouldn't speak, the judge could not confirm that they could hear the translation of the proceedings. Time elapsed while they set up loudspeakers in the court to carry the translations. Some lawyers objected to this solution, too, and translation remained a problem at the outset of the hearing.
Pohl said he would enter a not guilty plea on Mohammed's behalf, if he refused to enter a plea. Later, the five men chose to defer entering a plea, a routine practice during military court proceedings.
The next hearing is scheduled for June 12. It will likely be at least a year before the case goes to trial, Pohl said.
Hours into Saturday's proceeding, one of the defendants broke his silence with an outburst.
Binalshibh shouted in heavily accented English: "You may not see us anymore," he said. "They are going to kill us."
During recesses, the five men talked amongst each other and appeared relaxed. They passed around a copy of The Economist.
Binalshibh appeared to lead the group twice in prayer in the courtroom, once delaying the resumption of the hearing.
Mohammed, whose long beard appeared to be dyed red by henna, was much thinner than the last time he was seen publicly in a courtroom.
He also appeared much smaller and paler than the man the world came to know through photos released after his capture in March 2003 in Pakistan.
The charges allege that the five are "responsible for the planning and execution of the attacks of Sept. 11, 2001, in New York, Washington, D.C., and Shanksville, Pa., resulting in the killing of 2,976 people," the Defense Department said.
The military initially charged Mohammed in 2008, but President Barack Obama stopped the case as part of his effort to close the U.S. detention center at Guantanamo Bay, a U.S. naval base in Cuba.
Unable to close the center, Obama attempted to move the case to federal court in New York in 2009, only to run into a political firestorm. The plan was dropped after complaints about cost and security.
Last April, Attorney General Eric Holder announced the five would face a military trial at Guantanamo Bay.
The decision was met with some criticism, including from the American Civil Liberties Union.
ACLU Executive Director Anthony D. Romero said last month that the administration is making a "terrible mistake by prosecuting the most important terrorism trials of our time in a second-tier system of justice."